http://regrna2.mbc.nctu.edu.tw/RegRNA 2.0 is an integrated web server for identifying functional RNA motifs in an input RNA sequence. RegRNA 2.0 extendsour previvous work,
RegRNA which is a widely used regulatory RNA motifs identification tool (times cited: 47#) by incoporatingmore analytical methods and updated data sources. Through our integrated user-friendly interface, user can conveniently use these analytical approaches and observe results with good graphical visualization. Serveralkinds of functional RNA motifs and sites can be identified by RegRNA 2.0:
▪ Splicing sites (donor site, acceptor site)
▪ Splicing regulatory motifs(ESE, ESS, ISE, ISS elements)
▪ Polyadenylation sites
▪ Transcriptional motifs (rho-independentterminator, TRANSFAC)
▪ Translational motifs (ribosome binding sites)
▪ UTR motifs (UTRsite patterns)
▪ mRNA degradation elements (AU-rich elements)
▪ RNA editing sites (C-to-U editing sites)
▪ Riboswitches (RiboSW)
▪ RNA
cis-regulatory elements (Rfam, ERPIN)
▪ Similar funcitonal RNA sequences (fRNAdb)
▪ RNA-RNA interaction regions (miRNA, ncRNA)
▪ User defined Motif (RNAMotif)
▪ Miscellaneous information (open reading frame, GC-ratio, RNA accessibility and etc.)
