Artificial Intelligence Programming Lab(AIPLab) 討論區

Please login or register.

請輸入帳號, 密碼以及預計登入時間

新聞:

[慶賀]恭喜張清貿醫師升任北榮傳醫科主治醫師-20170201

作者 主題: [Tool] RegRNA: A Regulatory RNA Motifs and Elements Finder  (閱讀 869 次)

admin

  • 管理員
  • Hero Member
  • *****
  • 文章: 1839
    • 檢視個人資料
[Tool] RegRNA: A Regulatory RNA Motifs and Elements Finder
« 於: 十月 24, 2016, 11:48:41 pm »

http://regrna2.mbc.nctu.edu.tw/
RegRNA 2.0 is an integrated web server for identifying functional RNA motifs in an input RNA sequence. RegRNA 2.0 extendsour previvous work, RegRNA which is a widely used regulatory RNA motifs identification tool (times cited: 47#) by incoporatingmore analytical methods and updated data sources. Through our integrated user-friendly interface, user can conveniently use these analytical approaches and observe results with good graphical visualization. Serveralkinds of functional RNA motifs and sites can be identified by RegRNA 2.0:
  ▪ Splicing sites (donor site, acceptor site)
  ▪ Splicing regulatory motifs(ESE, ESS, ISE, ISS elements)
  ▪ Polyadenylation sites
  ▪ Transcriptional motifs (rho-independentterminator, TRANSFAC)
  ▪ Translational motifs (ribosome binding sites)
  ▪ UTR motifs (UTRsite patterns)
  ▪ mRNA degradation elements (AU-rich elements)
  ▪ RNA editing sites (C-to-U editing sites)
  ▪ Riboswitches (RiboSW)
  ▪ RNA cis-regulatory elements (Rfam, ERPIN)
  ▪ Similar funcitonal RNA sequences (fRNAdb)
  ▪ RNA-RNA interaction regions (miRNA, ncRNA)
  ▪ User defined Motif (RNAMotif)
  ▪ Miscellaneous information (open reading frame, GC-ratio, RNA accessibility and etc.)
已記錄
 

SimplePortal Classic 2.0.5