Artificial Intelligence Programming Lab(AIPLab) 討論區

Please login or register.

請輸入帳號, 密碼以及預計登入時間

新聞:

[慶賀]恭喜亞大獲《泰晤士報》亞洲最佳大學排名第83名,國內排名第十名-20170201

作者 主題: [Tool] Trinity Release v2.4.0  (閱讀 1697 次)

ngstool

  • 管理員
  • Newbie
  • *****
  • 文章: 16
    • 檢視個人資料
[Tool] Trinity Release v2.4.0
« 於: 二月 17, 2017, 04:03:28 pm »
-uses samtools v1.3, jellyfish 2.2.6, and trimmomatic 0.36
-seqtk now used for fastq->fasta conversions
-updated compute resource monitoring routines that leverage collectl
-included utilities to examine strand-specificity of the rna-seq reads:
https://github.com/trinityrnaseq/trinityrnaseq/wiki/Examine-Strand-Specificity
-Trinity carefully checks formatting of 'samples_file' to ensure it uses all the samples (dealing w/ non-unix text-editor formatting issues that can bundle the entire text file into what looks like a single line of text)
-Docker image updated to include salmon for abundance estimation
-refined use of bowtie2 in chrysalis clustering and various updates to improve long-read support.
已記錄
 

SimplePortal Classic 2.0.5